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author | k0kubun <k0kubun@b2dd03c8-39d4-4d8f-98ff-823fe69b080e> | 2018-07-08 14:38:05 +0000 |
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committer | k0kubun <k0kubun@b2dd03c8-39d4-4d8f-98ff-823fe69b080e> | 2018-07-08 14:38:05 +0000 |
commit | 3293322a39f9c9de11c54f9e9e78c55061ac2ce9 (patch) | |
tree | 7fb4371a89ef65beae9c264610b1aa996c178ad5 /benchmark/bm_so_reverse_complement.rb | |
parent | 1f4541cb98db06c17bfc902dc61a72ee955887d3 (diff) |
benchmark: introduce benchmark_driver.gem
Makefile.in: Clone benchmark-driver repository in benchmark/benchmark-driver
`make update-benchmark-driver`, like simplecov.
win32/Makefile.sub: Roughly do the same thing.
.gitignore: Ignore the cloned repository.
common.mk: Trigger `make update-benchmark-driver` to run `make benchmark`
and adjust arguments for benchmark_driver.gem.
benchmark/require.yml: renamed from benchmark/bm_require.rb, benchmark/prepare_require.rb
benchmark/require_thread.yml: renamed from benchmark/bm_require_thread.rb, benchmark/prepare_require_thread.rb
benchmark/so_count_words.yml: renamed from benchmark/bm_so_count_words.rb, benchmark/prepare_so_count_words.rb,
benchmark/wc.input.base
benchmark/so_k_nucleotide.yml: renamed from benchmark/bm_so_k_nucleotide.rb, benchmark/prepare_so_k_nucleotide.rb,
benchmark/make_fasta_output.rb
benchmark/so_reverse_complement.yml: renamed from benchmark/bm_so_reverse_complement.rb, benchmark/prepare_so_reverse_complement.rb,
benchmark/make_fasta_output.rb
I'm sorry but I made some duplications between benchmark/require.yml and benchmark/require_thread.yml,
and between benchmark/so_k_nucleotide.yml and benchmark/so_reverse_complement.yml.
If you're not comfortable with it, please combine these YAMLs to share
the same prelude. One YAML file can have multiple benchmark definitions
sharing prelude.
benchmark/driver.rb: Replace its core feature with benchmark_driver.gem.
Some old features are gone for now, but I'll add them again later.
[Misc #14902]
git-svn-id: svn+ssh://ci.ruby-lang.org/ruby/trunk@63888 b2dd03c8-39d4-4d8f-98ff-823fe69b080e
Diffstat (limited to 'benchmark/bm_so_reverse_complement.rb')
-rw-r--r-- | benchmark/bm_so_reverse_complement.rb | 30 |
1 files changed, 0 insertions, 30 deletions
diff --git a/benchmark/bm_so_reverse_complement.rb b/benchmark/bm_so_reverse_complement.rb deleted file mode 100644 index 82ea666994..0000000000 --- a/benchmark/bm_so_reverse_complement.rb +++ /dev/null @@ -1,30 +0,0 @@ -#!/usr/bin/ruby -# The Great Computer Language Shootout -# http://shootout.alioth.debian.org/ -# -# Contributed by Peter Bjarke Olsen -# Modified by Doug King - -seq=Array.new - -def revcomp(seq) - seq.reverse!.tr!('wsatugcyrkmbdhvnATUGCYRKMBDHVN','WSTAACGRYMKVHDBNTAACGRYMKVHDBN') - stringlen=seq.length - 0.step(stringlen-1,60) {|x| print seq.slice(x,60) , "\n"} -end - -input = open(File.join(File.dirname($0), 'fasta.output.2500000'), 'rb') - -while input.gets - if $_ =~ />/ - if seq.length != 0 - revcomp(seq.join) - seq=Array.new - end - puts $_ - else - $_.sub(/\n/,'') - seq.push $_ - end -end -revcomp(seq.join) |