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authork0kubun <k0kubun@b2dd03c8-39d4-4d8f-98ff-823fe69b080e>2018-07-08 14:38:05 +0000
committerk0kubun <k0kubun@b2dd03c8-39d4-4d8f-98ff-823fe69b080e>2018-07-08 14:38:05 +0000
commit3293322a39f9c9de11c54f9e9e78c55061ac2ce9 (patch)
tree7fb4371a89ef65beae9c264610b1aa996c178ad5 /benchmark/bm_so_reverse_complement.rb
parent1f4541cb98db06c17bfc902dc61a72ee955887d3 (diff)
benchmark: introduce benchmark_driver.gem
Makefile.in: Clone benchmark-driver repository in benchmark/benchmark-driver `make update-benchmark-driver`, like simplecov. win32/Makefile.sub: Roughly do the same thing. .gitignore: Ignore the cloned repository. common.mk: Trigger `make update-benchmark-driver` to run `make benchmark` and adjust arguments for benchmark_driver.gem. benchmark/require.yml: renamed from benchmark/bm_require.rb, benchmark/prepare_require.rb benchmark/require_thread.yml: renamed from benchmark/bm_require_thread.rb, benchmark/prepare_require_thread.rb benchmark/so_count_words.yml: renamed from benchmark/bm_so_count_words.rb, benchmark/prepare_so_count_words.rb, benchmark/wc.input.base benchmark/so_k_nucleotide.yml: renamed from benchmark/bm_so_k_nucleotide.rb, benchmark/prepare_so_k_nucleotide.rb, benchmark/make_fasta_output.rb benchmark/so_reverse_complement.yml: renamed from benchmark/bm_so_reverse_complement.rb, benchmark/prepare_so_reverse_complement.rb, benchmark/make_fasta_output.rb I'm sorry but I made some duplications between benchmark/require.yml and benchmark/require_thread.yml, and between benchmark/so_k_nucleotide.yml and benchmark/so_reverse_complement.yml. If you're not comfortable with it, please combine these YAMLs to share the same prelude. One YAML file can have multiple benchmark definitions sharing prelude. benchmark/driver.rb: Replace its core feature with benchmark_driver.gem. Some old features are gone for now, but I'll add them again later. [Misc #14902] git-svn-id: svn+ssh://ci.ruby-lang.org/ruby/trunk@63888 b2dd03c8-39d4-4d8f-98ff-823fe69b080e
Diffstat (limited to 'benchmark/bm_so_reverse_complement.rb')
-rw-r--r--benchmark/bm_so_reverse_complement.rb30
1 files changed, 0 insertions, 30 deletions
diff --git a/benchmark/bm_so_reverse_complement.rb b/benchmark/bm_so_reverse_complement.rb
deleted file mode 100644
index 82ea666994..0000000000
--- a/benchmark/bm_so_reverse_complement.rb
+++ /dev/null
@@ -1,30 +0,0 @@
-#!/usr/bin/ruby
-# The Great Computer Language Shootout
-# http://shootout.alioth.debian.org/
-#
-# Contributed by Peter Bjarke Olsen
-# Modified by Doug King
-
-seq=Array.new
-
-def revcomp(seq)
- seq.reverse!.tr!('wsatugcyrkmbdhvnATUGCYRKMBDHVN','WSTAACGRYMKVHDBNTAACGRYMKVHDBN')
- stringlen=seq.length
- 0.step(stringlen-1,60) {|x| print seq.slice(x,60) , "\n"}
-end
-
-input = open(File.join(File.dirname($0), 'fasta.output.2500000'), 'rb')
-
-while input.gets
- if $_ =~ />/
- if seq.length != 0
- revcomp(seq.join)
- seq=Array.new
- end
- puts $_
- else
- $_.sub(/\n/,'')
- seq.push $_
- end
-end
-revcomp(seq.join)