diff options
| author | yugui <yugui@b2dd03c8-39d4-4d8f-98ff-823fe69b080e> | 2008-08-25 15:13:14 +0000 |
|---|---|---|
| committer | yugui <yugui@b2dd03c8-39d4-4d8f-98ff-823fe69b080e> | 2008-08-25 15:13:14 +0000 |
| commit | d0233291bc8a5068e52c69c210e5979e5324b5bc (patch) | |
| tree | 7d9459449c33792c63eeb7baa071e76352e0baab /trunk/benchmark/bm_so_reverse_complement.rb | |
| parent | 0dc342de848a642ecce8db697b8fecd83a63e117 (diff) | |
| parent | 72eaacaa15256ab95c3b52ea386f88586fb9da40 (diff) | |
re-adding tag v1_9_0_4 as an alias of trunk@18848v1_9_0_4
git-svn-id: svn+ssh://ci.ruby-lang.org/ruby/tags/v1_9_0_4@18849 b2dd03c8-39d4-4d8f-98ff-823fe69b080e
Diffstat (limited to 'trunk/benchmark/bm_so_reverse_complement.rb')
| -rw-r--r-- | trunk/benchmark/bm_so_reverse_complement.rb | 30 |
1 files changed, 0 insertions, 30 deletions
diff --git a/trunk/benchmark/bm_so_reverse_complement.rb b/trunk/benchmark/bm_so_reverse_complement.rb deleted file mode 100644 index 82ea666994..0000000000 --- a/trunk/benchmark/bm_so_reverse_complement.rb +++ /dev/null @@ -1,30 +0,0 @@ -#!/usr/bin/ruby -# The Great Computer Language Shootout -# http://shootout.alioth.debian.org/ -# -# Contributed by Peter Bjarke Olsen -# Modified by Doug King - -seq=Array.new - -def revcomp(seq) - seq.reverse!.tr!('wsatugcyrkmbdhvnATUGCYRKMBDHVN','WSTAACGRYMKVHDBNTAACGRYMKVHDBN') - stringlen=seq.length - 0.step(stringlen-1,60) {|x| print seq.slice(x,60) , "\n"} -end - -input = open(File.join(File.dirname($0), 'fasta.output.2500000'), 'rb') - -while input.gets - if $_ =~ />/ - if seq.length != 0 - revcomp(seq.join) - seq=Array.new - end - puts $_ - else - $_.sub(/\n/,'') - seq.push $_ - end -end -revcomp(seq.join) |