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authoryugui <yugui@b2dd03c8-39d4-4d8f-98ff-823fe69b080e>2008-08-25 15:13:14 +0000
committeryugui <yugui@b2dd03c8-39d4-4d8f-98ff-823fe69b080e>2008-08-25 15:13:14 +0000
commitd0233291bc8a5068e52c69c210e5979e5324b5bc (patch)
tree7d9459449c33792c63eeb7baa071e76352e0baab /trunk/benchmark/bm_so_k_nucleotide.rb
parent0dc342de848a642ecce8db697b8fecd83a63e117 (diff)
parent72eaacaa15256ab95c3b52ea386f88586fb9da40 (diff)
re-adding tag v1_9_0_4 as an alias of trunk@18848v1_9_0_4
git-svn-id: svn+ssh://ci.ruby-lang.org/ruby/tags/v1_9_0_4@18849 b2dd03c8-39d4-4d8f-98ff-823fe69b080e
Diffstat (limited to 'trunk/benchmark/bm_so_k_nucleotide.rb')
-rw-r--r--trunk/benchmark/bm_so_k_nucleotide.rb48
1 files changed, 0 insertions, 48 deletions
diff --git a/trunk/benchmark/bm_so_k_nucleotide.rb b/trunk/benchmark/bm_so_k_nucleotide.rb
deleted file mode 100644
index dadab3e79c..0000000000
--- a/trunk/benchmark/bm_so_k_nucleotide.rb
+++ /dev/null
@@ -1,48 +0,0 @@
-# The Computer Language Shootout
-# http://shootout.alioth.debian.org
-#
-# contributed by jose fco. gonzalez
-# modified by Sokolov Yura
-
-seq = String.new
-
-def frecuency( seq,length )
- n, table = seq.length - length + 1, Hash.new(0)
- f, i = nil, nil
- (0 ... length).each do |f|
- (f ... n).step(length) do |i|
- table[seq[i,length]] += 1
- end
- end
- [n,table]
-
-end
-
-def sort_by_freq( seq,length )
- n,table = frecuency( seq,length )
- a, b, v = nil, nil, nil
- table.sort{|a,b| b[1] <=> a[1]}.each do |v|
- puts "%s %.3f" % [v[0].upcase,((v[1]*100).to_f/n)]
- end
- puts
-end
-
-def find_seq( seq,s )
- n,table = frecuency( seq,s.length )
- puts "#{table[s].to_s}\t#{s.upcase}"
-end
-
-input = open(File.join(File.dirname($0), 'fasta.output.100000'), 'rb')
-
-line = input.gets while line !~ /^>THREE/
-line = input.gets
-
-while (line !~ /^>/) & line do
- seq << line.chomp
- line = input.gets
-end
-
-[1,2].each {|i| sort_by_freq( seq,i ) }
-
-%w(ggt ggta ggtatt ggtattttaatt ggtattttaatttatagt).each{|s| find_seq( seq,s) }
-